Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g01400DBnaA06g01400D protein. (191 aa)    
Predicted Functional Partners:
BnaC03g77050D
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
   
 0.989
BnaA03g00900D
BnaA03g00900D protein.
   
 0.926
BnaA04g16160D
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
   
 0.922
BnaCnng67410D
BnaCnng67410D protein.
   
 0.922
BnaC05g05060D
Cell division control protein; Belongs to the CDC6/cdc18 family.
   
 0.909
BnaA09g42570D
BnaA09g42570D protein; Belongs to the cyclin family.
   
 0.908
BnaA09g03810D
BnaA09g03810D protein; Belongs to the cyclin family.
    
 0.908
BnaA04g12940D
BnaA04g12940D protein; Belongs to the cyclin family.
   
 0.908
BnaC09g21670D
BnaC09g21670D protein.
   
 0.903
BnaAnng07700D
BnaAnng07700D protein.
    
 0.902
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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