Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g50860DBnaC05g50860D protein. (702 aa)    
Predicted Functional Partners:
BnaCnng08680D
BnaCnng08680D protein.
  
  
 0.648
BnaCnng08690D
BnaCnng08690D protein.
     
 0.570
BnaAnng22590D
BnaAnng22590D protein.
      
 0.565
BnaA07g04890D
BnaA07g04890D protein.
  
  
 0.488
BnaC09g43110D
BnaC09g43110D protein.
     
 0.478
BnaA08g14580D
Membrane-anchored ubiquitin-fold protein; May serve as docking site to facilitate the association of other proteins to the plasma membrane.
      
 0.447
BnaA01g14350D
BnaA01g14350D protein.
      
 0.447
BnaC03g70040D
BnaC03g70040D protein.
      
 0.443
BnaA06g00570D
BnaA06g00570D protein.
      
 0.443
BnaC06g07030D
BnaC06g07030D protein.
      
 0.443
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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