STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g38910D4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family. (268 aa)    
Predicted Functional Partners:
BnaC04g49400D
BnaC04g49400D protein.
     
 0.646
BnaA04g25510D
BnaA04g25510D protein.
     
 0.646
BnaA06g09610D
BnaA06g09610D protein.
     
 0.579
BnaC05g49480D
BnaC05g49480D protein.
     
 0.579
BnaA08g31400D
BnaA08g31400D protein.
     
 0.579
BnaC03g66440D
BnaC03g66440D protein.
  
 0.546
BnaA03g52690D
BnaA03g52690D protein.
  
 0.546
BnaA08g11480D
BnaA08g11480D protein.
  
 0.546
BnaC09g36820D
Homoserine dehydrogenase.
   
  
 0.523
BnaC09g43800D
Aspartokinase; Belongs to the aspartokinase family.
   
  
 0.522
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.