Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g71420DBnaC03g71420D protein. (394 aa)    
Predicted Functional Partners:
BnaA02g12070D
BnaA02g12070D protein.
    
 0.948
BnaC02g45200D
BnaC02g45200D protein.
    
 0.948
BnaA04g15710D
BnaA04g15710D protein.
      
 0.685
BnaC04g00540D
BnaC04g00540D protein.
    
 0.635
BnaC08g44040D
BnaC08g44040D protein.
      
 0.550
BnaC05g03100D
BnaC05g03100D protein.
      
 0.550
BnaAnng12380D
BnaAnng12380D protein.
      
 0.550
BnaA07g24210D
BnaA07g24210D protein.
      
 0.549
BnaC06g31090D
BnaC06g31090D protein.
      
 0.549
BnaC02g19340D
BnaC02g19340D protein.
      
 0.549
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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