STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g48160DBnaC08g48160D protein. (213 aa)    
Predicted Functional Partners:
BnaA09g15790D
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.921
BnaC09g41520D
BnaC09g41520D protein.
    
 0.900
BnaA05g32160D
BnaA05g32160D protein.
    
 0.896
BnaC06g15470D
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 
 0.799
BnaC02g46810D
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 
 0.789
BnaC06g04400D
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.785
BnaA08g02090D
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.785
BnaC03g77750D
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.785
BnaA03g54920D
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.782
BnaCnng03550D
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.782
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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