Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g35100DBnaA05g35100D protein. (241 aa)    
Predicted Functional Partners:
BnaA06g15340D
BnaA06g15340D protein.
    
 0.904
BnaA06g14620D
BnaA06g14620D protein.
    
 0.904
BnaC07g15190D
BnaC07g15190D protein.
    
 0.904
BnaC08g19440D
BnaC08g19440D protein.
    
 0.904
BnaC08g19880D
BnaC08g19880D protein.
    
 0.904
BnaCnng50390D
BnaCnng50390D protein.
    
 0.904
BnaA08g27640D
BnaA08g27640D protein.
    
 0.869
BnaA09g55130D
BnaA09g55130D protein.
    
 0.869
BnaC09g23990D
Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
   
 0.851
BnaC01g24130D
BnaC01g24130D protein.
    
 0.851
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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