STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng23000DBnaCnng23000D protein. (264 aa)    
Predicted Functional Partners:
BnaA08g28170D
General transcription factor IIH subunit.
   
  
 0.488
BnaA06g23580D
BnaA06g23580D protein.
   
  
 0.472
BnaA01g13480D
BnaA01g13480D protein.
      
 0.465
BnaA06g20720D
BnaA06g20720D protein.
  
   
 0.463
BnaC03g57310D
BnaC03g57310D protein.
  
   
 0.463
BnaC04g56790D
BnaC04g56790D protein.
  
     0.452
BnaA02g12550D
BnaA02g12550D protein.
   
  
 0.442
BnaC06g27710D
BnaC06g27710D protein.
   
  
 0.442
BnaC02g17020D
BnaC02g17020D protein.
   
  
 0.442
BnaC06g27720D
BnaC06g27720D protein; Belongs to the protein kinase superfamily.
      
 0.441
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.