STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g27800DBnaC06g27800D protein. (687 aa)    
Predicted Functional Partners:
BnaC03g54720D
BnaC03g54720D protein.
      
 0.506
BnaC02g06870D
BnaC02g06870D protein.
      
 0.467
BnaC08g04450D
BnaC08g04450D protein.
      
 0.465
BnaA03g55240D
BnaA03g55240D protein.
      
 0.465
BnaC03g67170D
BnaC03g67170D protein.
    
 0.461
BnaC03g67190D
BnaC03g67190D protein.
    
 0.461
BnaA08g30650D
BnaA08g30650D protein.
    
 0.461
BnaA06g12290D
BnaA06g12290D protein.
    
 0.442
BnaA07g36380D
BnaA07g36380D protein.
    
 0.442
BnaA01g05840D
BnaA01g05840D protein.
      
 0.403
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.