STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA10g30070DBnaA10g30070D protein. (373 aa)    
Predicted Functional Partners:
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.520
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.512
BnaA01g33720D
BnaA01g33720D protein.
  
 
  0.495
BnaA01g24490D
BnaA01g24490D protein.
  
     0.486
BnaC01g40310D
BnaC01g40310D protein.
  
 
  0.465
BnaA09g42180D
BnaA09g42180D protein.
      
 0.451
BnaC04g04770D
BnaC04g04770D protein.
    
 
 0.442
BnaA02g35160D
BnaA02g35160D protein.
      
 0.430
BnaC03g63890D
Small nuclear ribonucleoprotein-associated protein.
    
 0.411
BnaC04g53030D
BnaC04g53030D protein.
      
 0.406
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.