Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng22980DBnaCnng22980D protein. (549 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
  0.659
BnaA07g00650D
BnaA07g00650D protein.
    
   0.641
BnaA03g00900D
BnaA03g00900D protein.
     
 0.633
BnaC07g49720D
BnaC07g49720D protein; Belongs to the protein kinase superfamily.
  
  
 0.612
BnaA05g20080D
BnaA05g20080D protein; Belongs to the protein kinase superfamily.
  
   
0.463
BnaC03g58600D
BnaC03g58600D protein; Belongs to the protein kinase superfamily.
     
 0.451
BnaCnng55310D
BnaCnng55310D protein; Belongs to the protein kinase superfamily.
  
 
  0.415
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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