Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng12350DBnaAnng12350D protein; Belongs to the protein kinase superfamily. (337 aa)    
Predicted Functional Partners:
BnaA04g10280D
BnaA04g10280D protein.
  
 
0.939
MKK3.1
Mitogen-activated protein kinase kinase 3.1.
  
 
0.939
BnaA08g14490D
BnaA08g14490D protein.
   
 
 0.646
BnaA03g47830D
BnaA03g47830D protein.
   
 
 0.646
BnaC08g12100D
BnaC08g12100D protein.
   
 
 0.646
BnaC09g43070D
BnaC09g43070D protein.
      
 0.634
BnaA10g12140D
BnaA10g12140D protein.
   
 
 0.624
BnaAnng29660D
BnaAnng29660D protein.
      
 0.585
BnaA09g06680D
BnaA09g06680D protein.
      
 0.563
BnaA04g16900D
BnaA04g16900D protein; Belongs to the cytochrome P450 family.
    
 
 0.563
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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