STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g40900DBnaA06g40900D protein. (445 aa)    
Predicted Functional Partners:
BnaC03g74310D
BnaC03g74310D protein.
      
 0.532
BnaAnng08860D
BnaAnng08860D protein.
      
 0.530
BnaC04g00120D
BnaC04g00120D protein.
      
 0.524
BnaA09g08460D
BnaA09g08460D protein.
      
 0.517
BnaA06g32690D
Alpha-mannosidase.
   
  
 0.513
BnaA09g08040D
Alpha-mannosidase.
   
  
 0.513
BnaCnng30620D
BnaCnng30620D protein.
   
  
 0.503
BnaC05g00060D
Mannosyltransferase.
      
 0.493
BnaC01g20850D
BnaC01g20850D protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
      
 0.493
BnaA09g26510D
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.493
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.