Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng25290DBnaCnng25290D protein. (680 aa)    
Predicted Functional Partners:
BnaA06g16430D
BnaA06g16430D protein.
   
 
 0.788
BnaC03g27880D
BnaA01g14270D protein.
   
 
 0.788
BnaA05g19980D
BnaA05g19980D protein.
    
 
 0.751
BnaC03g41830D
BnaC03g41830D protein.
    
 
 0.751
BnaA01g25490D
BnaA01g25490D protein.
    
 
 0.751
BnaA02g20080D
BnaA02g20080D protein.
    
 
 0.697
BnaC05g11010D
BnaC05g11010D protein.
    
 
 0.697
BnaC05g11000D
BnaC05g11000D protein.
    
 
 0.697
BnaA06g00080D
BnaA06g00080D protein.
    
 
 0.697
BnaCnng33800D
BnaCnng33800D protein.
    
 
 0.697
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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