STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g54280DBnaC04g54280D protein. (431 aa)    
Predicted Functional Partners:
BnaA05g12710D
BnaA05g12710D protein.
    
 0.514
BnaC04g54780D
BnaC04g54780D protein.
    
 0.514
BnaA07g00270D
BnaA07g00270D protein.
      
 0.511
BnaA09g56680D
BnaA09g56680D protein.
      
 0.511
BnaA05g30440D
BnaA05g30440D protein.
    
 
 0.499
BnaC04g31840D
BnaC04g31840D protein; Belongs to the universal ribosomal protein uS4 family.
    
 
 0.499
BnaC06g40570D
BnaC06g40570D protein.
      
 0.483
BnaA06g40960D
BnaA06g40960D protein.
    
 
 0.475
BnaCnng43650D
BnaCnng43650D protein.
    
 
 0.475
BnaA06g40810D
BnaA06g40810D protein.
    
 
 0.475
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.