STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g56890DBnaA03g56890D protein. (527 aa)    
Predicted Functional Partners:
BnaCnng31560D
BnaCnng31560D protein; Belongs to the membrane-bound acyltransferase family.
   
 0.956
BnaA09g12940D
BnaA09g12940D protein; Belongs to the membrane-bound acyltransferase family.
   
 0.951
BnaCnng41640D
BnaCnng41640D protein; Belongs to the membrane-bound acyltransferase family.
   
 0.951
BnaA09g20200D
BnaA09g20200D protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.921
BnaC01g41270D
BnaC01g41270D protein.
     
 0.913
BnaA05g14430D
BnaA05g14430D protein.
     
 0.910
BnaCnng35860D
BnaCnng35860D protein.
     
 0.910
BnaA03g01150D
BnaA03g01150D protein.
    
 0.908
BnaC02g02780D
BnaC02g02780D protein.
    
 0.908
BnaCnng07580D
BnaCnng07580D protein.
    
 0.908
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.