STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g56880DBnaA03g56880D protein. (213 aa)    
Predicted Functional Partners:
BnaA03g46780D
BnaA03g46780D protein.
  
 
 
0.517
BnaC02g02900D
BnaC02g02900D protein.
   
  
 0.496
BNTFL1-1
TERMINAL FLOWER 1-like gene.
   
  
 0.496
BnaCnng09530D
BnaCnng09530D protein.
      
 0.472
BnaA09g30390D
BnaA09g30390D protein.
      
 0.470
BnaA01g26330D
BnaA01g26330D protein.
      
 0.465
BnaC03g40730D
BnaC03g40730D protein.
      
 0.465
BnaCnng43250D
BnaCnng43250D protein.
      
 0.459
BnaA03g55080D
BnaA03g55080D protein.
    
 
 0.447
BnaA03g13320D
FRIGIDA-like protein; Belongs to the Frigida family.
      
 0.447
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.