STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng25380DBnaC07g47850D protein. (310 aa)    
Predicted Functional Partners:
BnaA04g27560D
BnaA04g27560D protein.
  
  0.573
BnaC04g23900D
BnaC04g23900D protein.
  
  0.572
BnaC04g02510D
BnaC04g02510D protein.
  
  0.571
BnaA04g17700D
BnaA04g17700D protein.
  
  
  0.558
BnaC09g31860D
BnaC09g31860D protein.
  
  0.548
BnaAnng34590D
BnaAnng34590D protein.
  
 
  0.548
BnaC05g50070D
BnaC05g50070D protein.
  
 
  0.544
BnaAnng15220D
BnaAnng15220D protein.
  
  
  0.541
BnaC04g48140D
BnaC04g48140D protein.
  
     0.538
BnaC04g04210D
BnaC04g04210D protein.
  
     0.538
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.