Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g28720DBnaA05g28720D protein. (427 aa)    
Predicted Functional Partners:
BnaC06g10920D
BnaC06g10920D protein.
   
  
 0.534
BnaA08g06880D
BnaA08g06880D protein.
   
  
 0.466
BnaC05g51340D
BnaC05g51340D protein.
   
  
 0.466
BnaCnng07350D
BnaCnng07350D protein.
  
  0.458
BnaA03g51000D
BnaA03g51000D protein.
     
 0.443
BnaA07g24800D
BnaA07g24800D protein.
      
 0.433
BnaC08g44830D
BnaC08g44830D protein.
      
 0.433
BnaA09g04890D
BnaA09g04890D protein.
  
  0.424
BnaA01g32300D
BnaA01g32300D protein; Belongs to the protein kinase superfamily.
  
 
0.420
BnaC05g43850D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
  
 
0.419
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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