STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g52450DBnaA09g52450D protein. (798 aa)    
Predicted Functional Partners:
BnaA07g31740D
BnaA07g31740D protein.
    
 0.520
BnaA08g05280D
BnaA08g05280D protein.
    
 
 0.477
BnaC03g75450D
BnaC03g75450D protein.
    
 
 0.476
BnaA07g31730D
BnaA07g31730D protein.
      
 0.471
BnaC02g03510D
BnaC02g03510D protein.
      
 0.467
BnaC09g37100D
BnaC09g37100D protein.
      
 0.446
BnaA02g05080D
BnaA02g05080D protein.
      
 0.446
BnaC02g08830D
BnaC02g08830D protein.
    
 
 0.411
BnaA02g04310D
BnaA02g04310D protein.
    
 
 0.411
BnaC09g38110D
BnaC09g38110D protein.
    
 
 0.411
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.