Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g37820DBnaA07g37820D protein; Belongs to the leguminous lectin family. (418 aa)    
Predicted Functional Partners:
BnaC01g20640D
BnaC01g20640D protein.
      
 0.679
BnaA07g24220D
BnaA07g24220D protein.
      
 0.529
BnaC02g19330D
BnaC02g19330D protein.
      
 0.529
BnaA02g14410D
BnaA02g14410D protein.
      
 0.529
BnaA04g05250D
BnaA04g05250D protein.
      
 0.516
BnaA09g28160D
BnaA09g28160D protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.516
BnaA10g06980D
BnaA10g06980D protein.
      
 0.470
BnaC09g30130D
BnaC09g30130D protein.
      
 0.470
BnaC02g44760D
BnaA02g10130D protein.
      
 0.470
BnaA02g16250D
BnaA02g16250D protein.
      
 0.463
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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