Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng30890DBnaCnng30890D protein. (200 aa)    
Predicted Functional Partners:
BnaA05g15410D
BnaA05g15410D protein.
    
  0.695
BnaA09g06200D
BnaA09g06200D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
   0.685
BnaA06g36930D
BnaA06g36930D protein.
  
 
   0.674
BnaC02g06780D
BnaC02g06780D protein.
  
 
  
0.655
BnaC02g06810D
BnaC02g06810D protein.
  
 
  
0.655
BnaA06g00940D
BnaA06g00940D protein.
    
  0.650
BnaA03g49400D
BnaA03g49400D protein.
    
  0.650
BnaC06g06330D
BnaC06g06330D protein.
    
  0.650
BnaC07g41790D
BnaC07g41790D protein.
    
  0.650
BnaA01g36890D
BnaA01g36890D protein.
    
  0.650
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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