STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng26350DBnaCnng26350D protein. (275 aa)    
Predicted Functional Partners:
BnaA09g04490D
BnaA09g04490D protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.816
BnaCnng48400D
BnaCnng48400D protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.816
BnaCnng39220D
BnaCnng39220D protein.
      
 0.451
BnaAnng11100D
BnaAnng11100D protein.
      
 0.445
BnaC07g04030D
BnaC07g04030D protein.
      
 0.422
BnaC05g47260D
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
      
 0.422
BnaA05g33000D
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
      
 0.422
BnaCnng44110D
BnaCnng44110D protein.
  
     0.405
BnaC05g23650D
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
      
 0.403
BnaC08g11250D
BnaC08g11250D protein.
      
 0.402
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.