STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g45580DBnaC02g45580D protein. (174 aa)    
Predicted Functional Partners:
BnaA09g52440D
BnaA09g52440D protein.
  
     0.535
BnaCnng65480D
BnaCnng65480D protein.
  
     0.534
BnaC03g56530D
BnaC03g56530D protein.
  
     0.532
BnaC01g43480D
BnaC01g43480D protein.
  
     0.530
BnaC07g32750D
BnaC07g32750D protein.
  
     0.529
BnaC01g21330D
BnaC01g21330D protein.
  
     0.529
BnaA06g20790D
BnaA06g20790D protein.
  
     0.526
BnaC03g56520D
BnaC03g56520D protein.
  
     0.525
BnaC02g32910D
BnaC02g32910D protein.
  
     0.525
BnaC09g52720D
BnaC09g52720D protein.
  
     0.520
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.