Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g43520DBnaC06g43520D protein. (474 aa)    
Predicted Functional Partners:
BnaA04g20160D
BnaA04g20160D protein.
      
 0.646
BnaC06g10230D
BnaC06g10230D protein.
  
   
 0.555
BnaA05g35630D
BnaA05g35630D protein.
  
   
 0.550
BnaA02g05220D
BnaA02g05220D protein.
     
 0.524
BnaC09g36800D
BnaC09g36800D protein.
     
 0.524
BnaC03g27940D
BnaC03g27940D protein.
      
 0.507
BnaC02g09970D
BnaC02g09970D protein.
      
 0.507
BnaA02g07050D
BnaA02g07050D protein.
      
 0.507
BnaC09g50700D
BnaC09g50700D protein.
      
 0.496
BnaC03g66180D
BnaC03g66180D protein.
      
 0.496
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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