STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g42310DBnaC01g42310D protein. (238 aa)    
Predicted Functional Partners:
BnaC09g46670D
BnaC09g46670D protein.
    
 
 0.525
BnaC02g00560D
BnaC02g00560D protein.
    
 
 0.525
BnaCnng07950D
BnaCnng07950D protein.
  
     0.514
BnaC01g20660D
BnaC01g20660D protein.
  
     0.501
BnaA03g49050D
BnaA03g49050D protein.
  
     0.494
BnaC02g01780D
BnaC02g01780D protein.
      
 0.493
BnaA08g13860D
BnaA08g13860D protein.
  
     0.491
BnaC03g41530D
BnaC03g41530D protein.
  
     0.489
BnaCnng48950D
BnaCnng48950D protein.
  
     0.489
BnaC04g55700D
BnaC04g55700D protein.
  
     0.487
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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