STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g54380DBnaC09g54380D protein. (558 aa)    
Predicted Functional Partners:
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.514
BnaA03g47790D
BnaA03g47790D protein.
  
     0.509
BnaA07g01400D
BnaA07g01400D protein.
  
     0.508
BnaC08g40810D
BnaC08g40810D protein.
  
     0.507
BnaA09g46730D
BnaA09g46730D protein.
  
     0.507
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.507
BnaA03g49830D
BnaA03g49830D protein.
  
     0.502
BnaC07g42180D
BnaC07g42180D protein.
  
     0.500
BnaCnng64530D
BnaCnng64530D protein.
  
     0.498
BnaA01g33720D
BnaA01g33720D protein.
  
 
  0.486
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.