Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g40290DBnaA06g40290D protein. (337 aa)    
Predicted Functional Partners:
BnaC09g36700D
BnaC09g36700D protein.
      
 0.680
BnaCnng10440D
BnaCnng10440D protein.
      
 0.634
BnaA09g40350D
BnaA09g40350D protein.
      
 0.596
BnaC04g15890D
BnaC04g15890D protein.
      
 0.596
BnaA04g16410D
BnaA04g16410D protein.
      
 0.596
BnaCnng55150D
BnaCnng55150D protein.
      
 0.596
BnaC04g25170D
BnaC04g25170D protein.
    
 0.574
BnaA05g28610D
BnaA05g28610D protein.
    
 0.574
BnaC08g43410D
BnaC08g43410D protein.
      
 0.549
BnaC08g02360D
BnaC08g02360D protein.
      
 0.549
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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