STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g42710DBnaC06g42710D protein. (240 aa)    
Predicted Functional Partners:
BnaA09g55770D
BnaA09g55770D protein.
    
 
 0.582
BnaA07g00650D
BnaA07g00650D protein.
    
 0.517
BnaA03g18330D
BnaA03g18330D protein.
    
 0.512
BnaC03g21850D
BnaC03g21850D protein.
    
 0.512
BnaC01g19530D
Dynein light chain.
    
 0.501
BnaC05g49130D
BnaC05g49130D protein.
      
 0.493
BnaA07g04030D
BnaA07g04030D protein.
    
   0.476
BnaC05g37270D
Dynein light chain.
    
 0.472
BnaA07g03340D
BnaA07g03340D protein.
    
 
 0.472
BnaC03g69340D
Dynein light chain.
    
 0.472
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.