STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g53030DBnaC04g53030D protein. (255 aa)    
Predicted Functional Partners:
BnaA02g35160D
BnaA02g35160D protein.
   
  
 0.538
BnaC02g28850D
BnaC02g28850D protein.
   
  
 0.520
BnaC04g24490D
BnaC04g24490D protein; Belongs to the glycosyl hydrolase 17 family.
   
  
 0.519
BnaC04g24430D
BnaC04g24430D protein; Belongs to the glycosyl hydrolase 17 family.
   
  
 0.519
BnaC04g24330D
BnaC04g24330D protein; Belongs to the glycosyl hydrolase 17 family.
   
  
 0.519
BnaAnng23590D
BnaAnng23590D protein; Belongs to the glycosyl hydrolase 17 family.
   
  
 0.519
BnaA08g19680D
BnaA08g19680D protein.
      
 0.477
BnaA03g53800D
BnaA03g53800D protein.
      
 0.467
BnaC07g51190D
BnaC07g51190D protein.
      
 0.467
BnaC07g51210D
BnaC07g51210D protein.
      
 0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.