STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g56720DBnaC04g56720D protein. (185 aa)    
Predicted Functional Partners:
BnaC05g40670D
BnaC05g40670D protein.
   
 0.991
BnaA02g19940D
BnaA02g19940D protein.
   
 0.988
BnaC02g23260D
BnaC02g23260D protein.
   
 0.988
BnaC06g43110D
BnaC06g43110D protein.
   
 0.988
BnaA07g38310D
BnaA07g38310D protein.
   
 0.988
BnaC03g74180D
BnaC03g74180D protein.
   
 0.983
BnaC01g38470D
BnaC01g38470D protein.
   
 0.981
BnaA01g30520D
BnaA01g30520D protein.
   
 0.981
BnaC03g74400D
DNA helicase; Belongs to the MCM family.
   
 0.962
BnaA09g00540D
DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]
   
 0.958
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.