STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g49280DBnaC08g49280D protein. (350 aa)    
Predicted Functional Partners:
BnaC05g43400D
Pectate lyase.
  
 
 0.761
BnaA05g28930D
Pectate lyase.
  
 
 0.751
BnaA07g04030D
BnaA07g04030D protein.
     
 0.744
BnaC05g09800D
Pectate lyase.
  
 
 0.741
BnaA09g55050D
Pectate lyase.
  
 
 0.732
BnaC05g09790D
Pectate lyase.
  
 
 0.728
BnaA06g09240D
Pectate lyase.
  
 
 0.725
BnaC05g10650D
Pectate lyase.
  
 
 0.722
BnaC02g17500D
Pectate lyase.
  
 
 0.721
BnaC03g64780D
Pectate lyase.
  
 
 0.720
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.