STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng36490DBnaCnng36490D protein. (429 aa)    
Predicted Functional Partners:
BnaA05g12250D
BnaA05g12250D protein; Belongs to the ubiquitin-activating E1 family.
     
 0.646
BnaC03g16630D
BnaC03g16630D protein; Belongs to the ubiquitin-activating E1 family.
     
 0.646
BnaA04g17280D
BnaA04g17280D protein; Belongs to the ubiquitin-activating E1 family.
     
 0.646
BnaA05g12410D
BnaA05g12410D protein.
     
 0.560
BnaC04g54380D
BnaC04g54380D protein.
     
 0.560
BnaC09g29660D
Pectinesterase; In the C-terminal section; belongs to the pectinesterase family.
      
 0.522
BnaA02g10290D
Pectinesterase; In the C-terminal section; belongs to the pectinesterase family.
      
 0.522
BnaC05g43270D
BnaC05g43270D protein.
  
  
 0.519
BnaA05g28800D
BnaA05g28800D protein.
  
  
 0.519
BnaC03g27330D
BnaC03g27330D protein.
    
 0.511
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.