STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g48500DBnaC02g48500D protein. (374 aa)    
Predicted Functional Partners:
BnaA10g07100D
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
    
 0.535
BnaCnng55890D
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
    
 0.535
BnaAnng29390D
BnaAnng29390D protein.
    
 0.535
BnaA09g08290D
BnaA09g08290D protein.
  
 
 0.530
BnaC05g14020D
BnaC05g14020D protein.
    
 0.526
BnaA06g12420D
BnaA06g12420D protein.
    
 0.526
BnaA08g15250D
BnaA08g15250D protein.
  
     0.523
BnaA03g53460D
BnaA03g53460D protein.
  
     0.523
BnaC03g76640D
BnaC03g76640D protein.
  
     0.522
BnaA03g01830D
BnaA03g01830D protein.
  
     0.515
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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