STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g28860DBnaA04g28860D protein. (199 aa)    
Predicted Functional Partners:
BnaAnng29040D
BnaAnng29040D protein.
    
 0.526
BnaA07g03760D
BnaA07g03760D protein.
   
  
 0.498
BnaCnng25150D
BnaCnng25150D protein.
   
  
 0.498
BnaA09g53050D
BnaA09g53050D protein.
   
  
 0.498
BnaC06g29760D
BnaC06g29760D protein.
    
 
 0.489
BnaC07g31790D
BnaC07g31790D protein.
   
 
 0.474
BnaA09g07790D
BnaA09g07790D protein.
   
 
 0.446
BnaC01g27190D
BnaC01g27190D protein.
   
 0.445
BnaA01g35760D
BnaA01g35760D protein.
   
 0.445
BnaA10g03740D
BnaA10g03740D protein.
   
  
 0.417
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.