STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g38610DBnaA06g38610D protein. (286 aa)    
Predicted Functional Partners:
BnaCnng76070D
BnaCnng76070D protein.
      
 0.508
BnaA09g07820D
BnaA09g07820D protein.
      
 0.472
BnaA10g12700D
BnaA10g12700D protein.
  
 
 
 0.441
BnaA05g19900D
BnaA05g19900D protein.
      
 0.412
BnaC03g41920D
BnaC03g41920D protein.
      
 0.412
BnaC05g30840D
BnaC05g30840D protein.
      
 0.412
BnaC09g00900D
BnaC09g00900D protein.
      
 0.402
BnaC03g64420D
BnaC03g64420D protein.
      
 0.402
BnaA08g30640D
BnaA08g30640D protein.
      
 0.402
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.