Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g30660DBnaA08g30660D protein. (599 aa)    
Predicted Functional Partners:
BnaA09g01920D
BnaA09g01920D protein.
      
 0.592
BnaC04g29600D
BnaC04g29600D protein.
      
 0.553
BnaC06g40290D
BnaC06g40290D protein.
      
 0.553
BnaC06g43690D
BnaC06g43690D protein.
    
 0.550
BnaA07g38880D
BnaA07g38880D protein.
    
 0.550
BnaA04g21740D
BnaA04g21740D protein.
      
 0.536
BnaC01g20210D
BnaC01g20210D protein.
      
 0.518
BnaAnng11850D
BnaAnng11850D protein.
      
 0.518
BnaAnng08160D
BnaAnng08160D protein.
      
 0.513
BnaC08g11110D
BnaC08g11110D protein.
      
 0.511
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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