STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g78260DBnaC03g78260D protein. (301 aa)    
Predicted Functional Partners:
BnaA02g27100D
Reticulon-like protein.
  
     0.461
BnaCnng71760D
WAT1-related protein.
  
     0.461
BnaCnng42870D
BnaCnng42870D protein.
  
     0.460
BnaA09g41990D
BnaA09g41990D protein.
  
     0.456
BnaA09g51490D
WAT1-related protein.
  
     0.451
BnaA03g46680D
BnaA03g46680D protein.
  
     0.448
BnaC06g15980D
BnaC06g15980D protein.
  
     0.447
BnaCnng65070D
WAT1-related protein.
  
     0.438
BnaA07g08500D
BnaA07g08500D protein.
      
 0.437
BnaA09g51980D
WAT1-related protein.
  
     0.435
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.