STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g42460DBnaC06g42460D protein. (282 aa)    
Predicted Functional Partners:
BnaC01g42300D
BnaC01g42300D protein.
  
     0.526
BnaCnng68010D
BnaCnng68010D protein.
  
     0.516
BnaA02g30390D
BnaA02g30390D protein.
  
     0.513
BnaA09g03120D
BnaA09g03120D protein.
  
     0.509
BnaA03g51920D
BnaA03g51920D protein.
  
     0.495
BnaA09g22840D
BnaA09g22840D protein.
  
     0.491
BnaC01g27570D
BnaC01g27570D protein.
  
     0.484
BnaAnng12040D
BnaAnng12040D protein.
  
     0.484
BnaA09g15920D
BnaA09g15920D protein.
  
     0.482
BnaC05g34960D
BnaC05g34960D protein.
  
     0.480
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.