BnaCnng41740D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BnaCnng41740D

BnaCnng41740D protein; Belongs to the protein kinase superfamily. (487 aa)

Predicted Functional Partners:

BnaA09g35690D

0.684

BnaC06g15960D

0.684

BnaA02g29370D

0.588

BnaC04g06000D

0.557

BnaA07g10640D

0.557

BnaA05g34650D

0.557

BnaC07g16860D

0.531

BnaC06g27640D

0.531

BnaA07g12820D

0.531

BnaC04g15340D

0.511

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g29370D	BnaA07g12820D	A0A078EWY5	A0A078I7U5	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	BnaA07g12820D protein.	0.490
BnaA02g29370D	BnaA09g35690D	A0A078EWY5	A0A078GRG3	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	BnaA09g35690D protein.	0.634
BnaA02g29370D	BnaC06g15960D	A0A078EWY5	A0A078H5C6	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	BnaC06g15960D protein.	0.634
BnaA02g29370D	BnaC06g27640D	A0A078EWY5	A0A078HCT2	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	BnaC06g27640D protein.	0.490
BnaA02g29370D	BnaC07g16860D	A0A078EWY5	A0A078GZ59	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	BnaC07g16860D protein.	0.490
BnaA02g29370D	BnaCnng41740D	A0A078EWY5	A0A078JB73	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	BnaCnng41740D protein; Belongs to the protein kinase superfamily.	0.588
BnaA05g34650D	BnaCnng41740D	A0A078IUC1	A0A078JB73	BnaA05g34650D protein.	BnaCnng41740D protein; Belongs to the protein kinase superfamily.	0.557
BnaA07g10640D	BnaCnng41740D	A0A078I969	A0A078JB73	BnaA07g10640D protein.	BnaCnng41740D protein; Belongs to the protein kinase superfamily.	0.557
BnaA07g12820D	BnaA02g29370D	A0A078I7U5	A0A078EWY5	BnaA07g12820D protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.490
BnaA07g12820D	BnaA09g35690D	A0A078I7U5	A0A078GRG3	BnaA07g12820D protein.	BnaA09g35690D protein.	0.549
BnaA07g12820D	BnaC06g15960D	A0A078I7U5	A0A078H5C6	BnaA07g12820D protein.	BnaC06g15960D protein.	0.549
BnaA07g12820D	BnaCnng41740D	A0A078I7U5	A0A078JB73	BnaA07g12820D protein.	BnaCnng41740D protein; Belongs to the protein kinase superfamily.	0.531
BnaA09g35690D	BnaA02g29370D	A0A078GRG3	A0A078EWY5	BnaA09g35690D protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.634
BnaA09g35690D	BnaA07g12820D	A0A078GRG3	A0A078I7U5	BnaA09g35690D protein.	BnaA07g12820D protein.	0.549
BnaA09g35690D	BnaC06g27640D	A0A078GRG3	A0A078HCT2	BnaA09g35690D protein.	BnaC06g27640D protein.	0.549
BnaA09g35690D	BnaC07g16860D	A0A078GRG3	A0A078GZ59	BnaA09g35690D protein.	BnaC07g16860D protein.	0.549
BnaA09g35690D	BnaCnng41740D	A0A078GRG3	A0A078JB73	BnaA09g35690D protein.	BnaCnng41740D protein; Belongs to the protein kinase superfamily.	0.684
BnaC04g06000D	BnaCnng41740D	A0A078G4Z4	A0A078JB73	BnaC04g06000D protein.	BnaCnng41740D protein; Belongs to the protein kinase superfamily.	0.557
BnaC04g15340D	BnaCnng41740D	A0A078FMW5	A0A078JB73	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	BnaCnng41740D protein; Belongs to the protein kinase superfamily.	0.511
BnaC06g15960D	BnaA02g29370D	A0A078H5C6	A0A078EWY5	BnaC06g15960D protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.634