STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng42420DPyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (403 aa)    
Predicted Functional Partners:
BnaC06g01550D
Dihydrolipoyl dehydrogenase.
  
 0.975
BnaA01g17630D
Dihydrolipoyl dehydrogenase.
  
 0.975
BnaC01g21970D
Dihydrolipoyl dehydrogenase.
  
 0.975
BnaA06g15140D
BnaA06g15140D protein.
 
 0.975
BnaUnng01000D
BnaUnng01000D protein.
 
 0.975
BnaCnng47410D
BnaCnng47410D protein.
 
 0.975
BnaA06g33300D
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
 
 0.971
BnaC09g21610D
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
 
 0.971
BnaAnng02240D
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
 
 0.970
BnaA06g00560D
Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 
 0.967
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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