STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g49730DBnaC05g49730D protein. (234 aa)    
Predicted Functional Partners:
BnaCnng74390D
BnaCnng74390D protein.
     
 0.513
BnaA03g52280D
BnaA03g52280D protein.
      
 0.499
BnaC06g40260D
BnaC06g40260D protein.
      
 0.493
BnaC07g13420D
BnaC07g13420D protein.
    
 
 0.471
BnaA09g30270D
BnaA09g30270D protein.
    
 
 0.471
BnaA07g10210D
BnaA07g10210D protein.
    
 
 0.471
BnaCnng54150D
BnaCnng54150D protein.
    
 
 0.471
BnaC07g12680D
BnaC07g12680D protein.
      
 0.469
BnaA07g09210D
BnaA07g09210D protein.
      
 0.469
BnaA09g35580D
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
      
 0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.