Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA10g28720DBnaA10g28720D protein. (853 aa)    
Predicted Functional Partners:
BnaC05g36680D
BnaC05g36680D protein.
   
 
 0.637
BnaC04g48390D
Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Belongs to the ferritin family.
   
  
 0.622
BnaAnng08310D
BnaAnng08310D protein.
      
 0.608
BnaA03g52870D
Adenylyl cyclase-associated protein; Belongs to the CAP family.
    
 0.549
BnaC03g66050D
Adenylyl cyclase-associated protein; Belongs to the CAP family.
    
 0.549
BnaA08g27260D
BnaA08g27260D protein.
      
 0.537
BnaC05g01530D
BnaC05g01530D protein.
      
 0.537
BnaAnng20980D
BnaAnng20980D protein.
      
 0.537
BnaC05g02220D
Long-chain-alcohol oxidase; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation.
      
 0.535
BnaA03g58930D
Long-chain-alcohol oxidase; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation.
      
 0.535
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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