STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng43920DAlkyl transferase; Belongs to the UPP synthase family. (271 aa)    
Predicted Functional Partners:
BnaA08g25150D
BnaA08g25150D protein.
   
 0.946
BnaC.PSY.a
BnaC09g40730D protein.
   
 
 0.828
BnaA09g55740D
BnaA09g55740D protein.
  
  
 0.814
BnaA06g35250D
BnaA06g35250D protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.803
BnaCnng57390D
BnaCnng57390D protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.803
BnaAnng04260D
BnaAnng04260D protein; Belongs to the terpene synthase family.
     
  0.800
BnaA01g29370D
BnaA01g29370D protein.
     
 0.800
BnaCnng41750D
BnaCnng41750D protein.
     
  0.800
BnaC07g03180D
BnaC07g03180D protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.781
BnaC04g37010D
BnaC04g37010D protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.781
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.