STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng43020DBnaCnng43020D protein. (570 aa)    
Predicted Functional Partners:
BnaC03g30250D
BnaC03g30250D protein.
   
 
 0.526
BnaA09g01420D
BnaA09g01420D protein.
   
 
 0.526
BnaA08g26500D
BnaA08g26500D protein.
   
 
 0.516
BnaCnng06760D
BnaCnng06760D protein.
   
 
 0.516
BnaC08g45380D
BnaC08g45380D protein.
   
  
 0.507
BnaA01g07350D
BnaA01g07350D protein.
   
 
 0.507
BnaC04g54870D
BnaC04g54870D protein.
   
 
 0.507
BnaA08g27360D
BnaA08g27360D protein.
      
 0.493
BnaC05g37130D
BnaC05g37130D protein.
  
  
 0.488
BnaC06g05260D
BnaC06g05260D protein.
  
  
 0.488
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.