STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng40020DBnaCnng40020D protein. (568 aa)    
Predicted Functional Partners:
BnaCnng53620D
BnaCnng53620D protein.
   
 
 0.724
BnaA09g16530D
BnaA09g16530D protein.
  
 
 0.662
BnaC09g17580D
BnaC09g17580D protein.
  
 
 0.662
BnaA06g02770D
BnaA06g02770D protein.
  
 
 0.630
BnaC06g03680D
BnaC06g03680D protein.
  
 
 0.630
BnaC04g26620D
BnaC04g26620D protein.
  
  
 0.570
BnaC03g64140D
BnaC03g64140D protein.
    
  0.563
BnaA08g30770D
BnaA08g30770D protein.
 
  
 0.539
BnaC06g01500D
BnaC06g01500D protein.
  
  
 0.538
BnaC06g06340D
BnaC06g06340D protein.
  
     0.533
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.