Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA10g30230DBnaA10g30230D protein. (359 aa)    
Predicted Functional Partners:
BnaC05g47430D
BnaC05g47430D protein.
     
 0.525
BnaA05g33180D
BnaA05g33180D protein.
     
 0.525
BnaA04g28420D
BnaA04g28420D protein.
      
 0.510
BnaA06g19800D
BnaA06g19800D protein.
      
 0.482
BnaA07g00830D
BnaA07g00830D protein.
   
  
 0.476
BnaA09g09930D
BnaA09g09930D protein.
   
  
 0.476
BnaA04g29340D
BnaA04g29340D protein.
   
  
 0.476
BnaA03g56380D
BnaA03g56380D protein.
      
 0.448
BnaAnng34830D
BnaAnng34830D protein.
      
 0.448
BnaA02g24110D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.428
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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