Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng41330DBnaCnng41330D protein. (161 aa)    
Predicted Functional Partners:
BnaCnng32140D
BnaCnng32140D protein.
      
 0.564
BnaC08g26230D
BnaC08g26230D protein.
  
     0.544
BnaCnng04480D
BnaCnng04480D protein.
  
 
   0.542
BnaC02g19200D
BnaC02g19200D protein.
  
  
  0.542
BnaC09g22160D
BnaC09g22160D protein.
  
  
  0.542
BnaA09g20900D
BnaA09g20900D protein.
  
  
 0.541
BnaUnng00240D
BnaUnng00240D protein.
  
     0.541
BnaA07g01160D
BnaA07g01160D protein.
  
    0.541
BnaC08g26220D
BnaC08g26220D protein.
  
     0.539
BnaC08g11220D
BnaC08g11220D protein.
  
    0.538
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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