STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g34880DBnaA05g34880D protein. (309 aa)    
Predicted Functional Partners:
BnaC03g66440D
BnaC03g66440D protein.
  
 0.546
BnaA03g52690D
BnaA03g52690D protein.
  
0.546
BnaA08g11480D
BnaA08g11480D protein.
  
0.546
BnaC08g42340D
BnaC08g42340D protein.
  
 0.513
BnaC01g28790D
BnaC01g28790D protein.
  
 0.513
BnaAnng34370D
BnaAnng34370D protein.
  
 0.513
BnaA08g02470D
BnaA08g02470D protein.
  
 0.506
BnaC06g02710D
BnaC06g02710D protein.
  
 0.506
BnaC08g02680D
BnaC08g02680D protein.
  
 0.506
BnaA06g03020D
BnaA06g03020D protein.
  
 0.506
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.