STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g38450DBnaA06g38450D protein. (98 aa)    
Predicted Functional Partners:
BnaA09g42280D
BnaA09g42280D protein.
    
 
 0.479
BnaA01g26790D
BnaA01g26790D protein.
      
 0.478
BnaC04g56800D
BnaC04g56800D protein.
      
 0.471
BnaC02g24960D
BnaC02g24960D protein.
      
 0.468
BnaA02g18850D
BnaA02g18850D protein.
      
 0.468
BnaA09g36180D
BnaA09g36180D protein.
      
 0.467
BnaA08g06740D
BnaA08g06740D protein.
      
 0.467
BnaA04g27600D
BnaA04g27600D protein.
      
 0.465
BnaA02g13850D
BnaA02g13850D protein.
      
 0.442
BnaA03g55760D
BnaA03g55760D protein.
      
 0.442
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.