Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng42020DBnaCnng42020D protein. (576 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
   
 0.784
BnaAnng07990D
BnaAnng07990D protein.
   
 
 0.691
BnaA03g47120D
BnaA03g47120D protein.
   
 
 0.669
BnaC08g42780D
BnaC08g42780D protein.
   
 
 0.669
BnaC06g10870D
BnaC06g10870D protein.
   
 
 0.669
BnaC03g16150D
BnaC03g16150D protein.
   
 
 0.669
BnaA10g07130D
BnaA10g07130D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
 
0.668
BnaC02g34410D
BnaC02g34410D protein.
    
 
0.668
BnaA02g10040D
BnaA02g10040D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
 
0.668
BnaC09g12490D
BnaC09g12490D protein.
   
 
  0.654
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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